PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023700
Common NameLOC102596583
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 216aa    MW: 23925.3 Da    PI: 6.393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023700genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-1064108554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  PGSC0003DMP400023700  64 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 108
                           99***********************8.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.83E-1157113No hitNo description
SuperFamilySSF474594.58E-1657119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.32359108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1661120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-864108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1165114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDMGNLYPGL EHLQSHAVCL SVPQVHQVQP FQGHPTSSTT VTIPHQPAIR PMVRARRGQA  60
TDPHSIAERL RRERISERIK ALQELVPSCN KTDRAAMLDE ILDYVKFLRL QVKVLSMSRL  120
GGASAVAQLV ADIPLQSVEG DSCESRSNQH VWEKWSDSET EQEVAKLMEE DVGTAMQYLQ  180
SKSLCIMPVS LAALIYPTQQ TDNQSMVKPE PTAPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132310.0BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356051.21e-159PREDICTED: transcription factor UNE12-like
RefseqXP_015168141.11e-159PREDICTED: transcription factor UNE12-like
SwissprotO227686e-74UNE12_ARATH; Transcription factor UNE12
TrEMBLM1B1D01e-157M1B1D0_SOLTU; Uncharacterized protein
TrEMBLM1B1D41e-158M1B1D4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000348401e-158(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.34e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]