PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023446
Common NameLOC107061527
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 179aa    MW: 20180.4 Da    PI: 4.9801
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023446genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-204596256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +y GVr ++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+++++g+
  PGSC0003DMP400023446 45 QYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAALSMRGP 96
                          799******.**********44465..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-2944104No hitNo description
PROSITE profilePS5103221.66745103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3045103IPR001471AP2/ERF domain
SMARTSM003805.4E-3545109IPR001471AP2/ERF domain
PfamPF008478.8E-144595IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2245105IPR016177DNA-binding domain
PRINTSPR003675.4E-104657IPR001471AP2/ERF domain
PRINTSPR003675.4E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MNHSFSIETS SYDEEIKIKD EEEEIITFNN NNIIQDQENT QKGKQYIGVR KRPWGKYAAE  60
IRDSTRNGIR VWLGTFDTAE EAALAYDQAA LSMRGPSTCL NFQVEVVQES LRGFNYNSQE  120
GSTSSPAEVI KEKHKKRNSK GKKTIKSNKE QNNNVLVLED LGPDLLDELL SSKCSTLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2842106266ATERF1
3gcc_A4e-2842106266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato). {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023446
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Ethylene induction is completely dependent on functional ETHYLENE-INSENSITIVE2 (EIN2), ETHYLENE-INSENSITIVE3 (EIN3), which is itself a transcription factor and CORONATIVE-INSENSITIVE1 (COI1) proteins. Induction by jasmonate, B.cinerea or F.oxysporum as well as the synergistic induction by ethylene and jasmonate requires EIN2 and COI1. Induction by methyl jasmonate (MeJA) is independent of JAR1. Induction by salicylic acid (SA) is dependent on NPR1 but not on PAD4. Seems not to be induced by Alternaria brassicicola. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166367.11e-130PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-44ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLM1B0S21e-129M1B0S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000344871e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-29ethylene response factor 1
Publications ? help Back to Top
  1. Zarate SI,Kempema LA,Walling LL
    Silverleaf whitefly induces salicylic acid defenses and suppresses effectual jasmonic acid defenses.
    Plant Physiol., 2007. 143(2): p. 866-75
    [PMID:17189328]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Vahabi K,Camehl I,Sherameti I,Oelm├╝ller R
    Growth of Arabidopsis seedlings on high fungal doses of Piriformospora indica has little effect on plant performance, stress, and defense gene expression in spite of elevated jasmonic acid and jasmonic acid-isoleucine levels in the roots.
    Plant Signal Behav, 2013. 8(11): p. e26301
    [PMID:24047645]
  4. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  5. Li J,Jia H,Wang J
    cGMP and ethylene are involved in maintaining ion homeostasis under salt stress in Arabidopsis roots.
    Plant Cell Rep., 2014. 33(3): p. 447-59
    [PMID:24306353]
  6. Zhong S, et al.
    Ethylene-orchestrated circuitry coordinates a seedling's response to soil cover and etiolated growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(11): p. 3913-20
    [PMID:24599595]
  7. Kim HG, et al.
    GDSL lipase 1 regulates ethylene signaling and ethylene-associated systemic immunity in Arabidopsis.
    FEBS Lett., 2014. 588(9): p. 1652-8
    [PMID:24631536]
  8. Schellingen K, et al.
    Cadmium-induced ethylene production and responses in Arabidopsis thaliana rely on ACS2 and ACS6 gene expression.
    BMC Plant Biol., 2014. 14: p. 214
    [PMID:25082369]
  9. Ellouzi H, et al.
    A comparative study of the early osmotic, ionic, redox and hormonal signaling response in leaves and roots of two halophytes and a glycophyte to salinity.
    Planta, 2014. 240(6): p. 1299-317
    [PMID:25156490]
  10. Nguyen AH, et al.
    Loss of Arabidopsis 5'-3' Exoribonuclease AtXRN4 Function Enhances Heat Stress Tolerance of Plants Subjected to Severe Heat Stress.
    Plant Cell Physiol., 2015. 56(9): p. 1762-72
    [PMID:26136597]
  11. Cheng MC,Kuo WC,Wang YM,Chen HY,Lin TP
    UBC18 mediates ERF1 degradation under light-dark cycles.
    New Phytol., 2017. 213(3): p. 1156-1167
    [PMID:27787902]
  12. Timmermann T, et al.
    Paraburkholderia phytofirmans PsJN Protects Arabidopsis thaliana Against a Virulent Strain of Pseudomonas syringae Through the Activation of Induced Resistance.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 215-230
    [PMID:28118091]
  13. Yu Y,Huang R
    Integration of Ethylene and Light Signaling Affects Hypocotyl Growth in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 57
    [PMID:28174592]
  14. Lestari R, et al.
    Overexpression of Hevea brasiliensis ethylene response factor HbERF-IXc5 enhances growth and tolerance to abiotic stress and affects laticifer differentiation.
    Plant Biotechnol. J., 2018. 16(1): p. 322-336
    [PMID:28626940]
  15. Dinolfo MI,Casta├▒ares E,Stenglein SA
    Resistance of Fusarium poae in Arabidopsis leaves requires mainly functional JA and ET signaling pathways.
    Fungal Biol, 2017. 121(10): p. 841-848
    [PMID:28889908]