PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023373
Common NameLOC102597818
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 347aa    MW: 38027.1 Da    PI: 7.7244
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023373genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1101.3e-3457114359
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                            v Y+eClkNhAaslGghavDGCgEf+ps++++ +++++lkCaACgCHRnFHRre+ee
  PGSC0003DMP400023373  57 VVIYRECLKNHAASLGGHAVDGCGEFLPSPTANpSDPTSLKCAACGCHRNFHRREPEE 114
                           589****************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.4E-2958112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08460111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.3E-3160111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-2360110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.55E-16187260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-28188261IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-25199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDLTNNTTIT TTTTTTTTVK TPEAEIETPT QIQKLKPFPF SNGVLKRKSS FHHHPVVVIY  60
RECLKNHAAS LGGHAVDGCG EFLPSPTANP SDPTSLKCAA CGCHRNFHRR EPEEPVVIPP  120
PPIATAVLEY QPHHRHHPPP PLQVPRGDHS SPNSPSPPPI SSAYYPASAP HMLLALSAGF  180
CGEKNQNPTS APLANSNGRK RFRTKFTPDQ KVKMLELAER IGWKMQKRDE DLVSNFCNEI  240
GVEKGVLKVW MHNNKNTFGK KSDQPNSGSG DGDNDNDNDD NHHQNGNTNS VNGFCIVSRN  300
NNTDSEFHQH IQQHQHESNN SDNKKGIIHH LHTSDSVVAT NGSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-202002571875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023373
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363398.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF05e-72ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLM1B0K20.0M1B0K2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000343680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.16e-65homeobox protein 34
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]