PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022655
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 357aa    MW: 40059.6 Da    PI: 5.0755
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022655genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.3e-1071107439
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 
                           +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+
  PGSC0003DMP400022655  71 DKVRRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 107
                           799**************************82444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-767115No hitNo description
SMARTSM003388.4E-568131IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.96770114IPR004827Basic-leucine zipper domain
PfamPF001701.2E-671107IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.57E-672113No hitNo description
PROSITE patternPS0003607590IPR004827Basic-leucine zipper domain
PfamPF141447.4E-30159233IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGICDPIHQI GMWGDFKGSS FPDTLILEVE NCLENEMPIM EKRLENEIEE PSQVTVGTSN  60
RYEPETTKRI DKVRRRLAQN REAARKSRLR KKAYVQQLEN SKLKLLQLEQ ELERNRQQGL  120
CVGDGLDASQ IGCSGTANSG IASFEMEYGH WVEEQDRQTD DLRNALNSQM GEIELRILVE  180
GCLNHYFDLF RLKATAANAD VLYLMSGTWK TSAERFFLWI GGFRPSELLK VLTPHVEPLS  240
DQQIQEVSNL TQSCQQAEDA LSQGMVKLHQ ILAEAVAAGT LGEGIILPQM TATIEKLEAL  300
VRFVNQADHL RQETLLQMSC ILAAHQSAQG LLALGEYFKR LRALSSLWAG RLSEPA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022655
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX825440.0X82544.1 S.tuberosum mRNA for leucine zipper transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305473.10.0TGACG-sequence-specific DNA-binding protein TGA-1A
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLM1AYX40.0M1AYX4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000333080.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-137bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  5. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  6. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]