PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018962
Common NameLOC102580067
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 183aa    MW: 20370.8 Da    PI: 7.1876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018962genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1958110156
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 
                           ++y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa a+++a+ +++g+
  PGSC0003DMP400018962  58 KKYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFETAEEAALAYDRAAFRMRGA 110
                           59********.**********....33236**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.01E-3358117No hitNo description
SuperFamilySSF541711.96E-2359118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3159118IPR001471AP2/ERF domain
SMARTSM003801.6E-3459123IPR001471AP2/ERF domain
PfamPF008471.7E-1459109IPR001471AP2/ERF domain
PROSITE profilePS5103223.98659117IPR001471AP2/ERF domain
PRINTSPR003671.8E-116071IPR001471AP2/ERF domain
PRINTSPR003671.8E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVPTPQSDLP LNENDSQEMV LYEVLNEANA LNIPYLPQRN QLLPRNTNNL RPSQCIGKKY  60
RGVRRRPWGK YAAEIRDSAR HGARVWLGTF ETAEEAALAY DRAAFRMRGA KALLNFPSEI  120
VTASVSVEKL SLCSNSYTTN NNSNSSSNEV SSGTSDAFES KISKEFSQDV KTELCMENFL  180
VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3357120366ATERF1
3gcc_A4e-3357120366ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018962
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367196.11e-133PREDICTED: pathogenesis-related genes transcriptional activator PTI5
SwissprotO046811e-107PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLM1AQ941e-132M1AQ94_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000278491e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-33ethylene response factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]