PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016629
Common NameLOC102593018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 312aa    MW: 35162.7 Da    PI: 6.8999
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016629genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.36.8e-35231283104
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaessss 80 
                           g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++           +       ++++ ++
  PGSC0003DMP400016629  23 GRKDRHSKVYTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpnqipssT-------NEADVVV 104
                           89*************************************************************988875444330.......3333333 PP

                   TCP  81 sasnsssgkaaksaakskksqksa 104
                            +++++ + +++ +++++++ +s+
  PGSC0003DMP400016629 105 LEQQPEYQLQRELEENNQSQVNSS 128
                           333333332222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3123126IPR005333Transcription factor, TCP
PROSITE profilePS5136931.9642482IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKRATGGGEI VQVEGGHILR SIGRKDRHSK VYTAKGPRDR RVRLAAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKNAID KLDELPPWNP NQIPSSTNEA DVVVLEQQPE YQLQRELEEN  120
NQSQVNSSNS YMMQGGGGGG GGGEAQQSLG DTMKSFFPMN SGTSLMNFQN YPHEIMPRSS  180
LQNEDLGLSL HTTFHRASTS SHHDDDHSTL FSNQNFEANY PRMASWNLLP QTFFTQNATA  240
FTQREPLQSN FSHLINHHAN WEERPLMNGL IHNQVEISNN SRHFTTDFQV PARIHGEHHE  300
HHSSASPNAH H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-232982154Putative transcription factor PCF6
5zkt_B8e-232982154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016629
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348845.10.0PREDICTED: transcription factor TCP4
TrEMBLM1AJX30.0M1AJX3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000243290.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-49TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]