PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015850
Common NameLOC102597639
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 74aa    MW: 8362.79 Da    PI: 11.4259
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015850genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.48.8e-115373222
                          --SS-EEEEEEE--TT-SS-E CS
                  WRKY  2 dDgynWrKYGqKevkgsefpr 22
                          +D ++WrKYGqK++kgs++pr
  PGSC0003DMP400015850 53 SDCWSWRKYGQKPIKGSPYPR 73
                          699*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-104373IPR003657WRKY domain
SuperFamilySSF1182904.18E-84973IPR003657WRKY domain
PROSITE profilePS5081112.6335373IPR003657WRKY domain
PfamPF031062.8E-65473IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MGRSKPTKSQ SKTSRLLQPQ FLASKNRKMA QKVVITVQME AKSLKQKNEG PPSDCWSWRK  60
YGQKPIKGSP YPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015850
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754406e-72HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164982.14e-46PREDICTED: probable WRKY transcription factor 65 isoform X2
TrEMBLM1AI273e-45M1AI27_SOLTU; Uncharacterized protein
TrEMBLM1AI281e-44M1AI28_SOLTU; Uncharacterized protein
STRINGSolyc01g079360.2.15e-45(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-13WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]