PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013078
Common NameLOC102599114
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 262aa    MW: 29741.3 Da    PI: 5.9129
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013078genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.67.9e-31129188159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++DgynWrKYGqK+ +++++pr+YY+C++a +Cpvkkkv+rs edp++++ +YegeHnh+
  PGSC0003DMP400013078 129 VKDGYNWRKYGQKVTRDNPYPRAYYKCSFApTCPVKKKVQRSIEDPSILVAVYEGEHNHP 188
                           58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-30120190IPR003657WRKY domain
PROSITE profilePS5081127.336124190IPR003657WRKY domain
SuperFamilySSF1182901.7E-26125190IPR003657WRKY domain
SMARTSM007748.6E-35129189IPR003657WRKY domain
PfamPF031063.8E-25130188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDTSLGDNSF SIDLNTNLSL HNTNTSPRET LDEELIRMRE ENKKLVTMLT NLCENYNSLQ  60
THLIELLQKY STHNEEDNSN LLLPRKRKAE EECCVNNFEE ASPKRPREIT TNVSTVCVKT  120
NRSDQTSVVK DGYNWRKYGQ KVTRDNPYPR AYYKCSFAPT CPVKKKVQRS IEDPSILVAV  180
YEGEHNHPHP SQTEITVPLV NQDVTTDPTF SNKFMEDIDT NSLQQHLVQQ MASSLTSSPT  240
FTAAVAAAIS GKIFEYDLPF K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-211231911178Probable WRKY transcription factor 4
2lex_A3e-211231911178Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361532.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH72e-62WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLM1ABK00.0M1ABK0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000190580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-64WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  4. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  5. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  6. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  7. Carrió-Seguí À,Romero P,Sanz A,Peñarrubia L
    Interaction Between ABA Signaling and Copper Homeostasis in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(7): p. 1568-1582
    [PMID:27328696]
  8. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]
  9. Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
    Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
    Plant Cell, 2017. 29(1): p. 20-38
    [PMID:28011690]
  10. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]
  11. Zhang S, et al.
    The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling.
    Plant Physiol., 2017. 173(4): p. 2294-2307
    [PMID:28250067]
  12. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]