PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012605
Common NameLOC102605180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 489aa    MW: 54371.8 Da    PI: 6.8017
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012605genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.33.7e-09184223443
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                            k  rr+++NReAA++sR RKka++++Le+    L++  +
  PGSC0003DMP400012605 184 EKTLRRLAQNREAAKKSRIRKKAYVQQLETSRIRLSQLEQ 223
                           5788*************************86655555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-7179227No hitNo description
SMARTSM003382.9E-5181258IPR004827Basic-leucine zipper domain
PfamPF077164.6E-7183227IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.071183227IPR004827Basic-leucine zipper domain
CDDcd147088.56E-21185237No hitNo description
SuperFamilySSF579591.41E-6185227No hitNo description
PROSITE patternPS000360188203IPR004827Basic-leucine zipper domain
PfamPF141443.7E-32266340IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASQGIGETG LTDSGTSHHN HNMPYAVFRG LNPASTSFMY HSTPNGNQEG AGFDFGELEE  60
AFVLQGFKMS NDEAKASLYA AAATGKPAAT LEMFPSWPMR YQQTPRENSK SREESTDSGS  120
LSSRAQPHFE PESPISRKTS SDHQLQITHK SLEQQQQQLQ DMASNNNPRT GVLQTELSSK  180
SNSEKTLRRL AQNREAAKKS RIRKKAYVQQ LETSRIRLSQ LEQELQRASS QGIFLGGGTA  240
AGSNISSGAA IFDMEYSRWL DDDHRHIAEL RTALQAHLSD GDLRLIVDGY IAHYDEIFNL  300
KGVAAKSDVF HLITGMWTTP AERCFLWMGG FRPSELIKML IGQLDPLTEQ QVVGIYSLQQ  360
SSQQAEEALS QGLEQLQQSL IDTVATASLH DGMHHMALAL GKLSNLEGFV RQADNLRQQT  420
LHQLHRILTV RQAARCFLVI GEYYGRLRAL SSLWLSRPRE TLIVDDNSCQ TITGLQMVQS  480
SQNHFSNF*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012605
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6933870.0KT693387.1 Capsicum annuum AILZ1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347246.10.0PREDICTED: transcription factor TGA2 isoform X3
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLM1AAE60.0M1AAE6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000183060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36832340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-167bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]