PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012451
Common NameLOC102593983
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 190aa    MW: 21856.7 Da    PI: 10.8681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012451genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-1863113255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp   + k +r +lg++ t+e+Aa a+++ + kl+g
  PGSC0003DMP400012451  63 RYRGVRRRP-WGKFAAEIRDP---KrKGARLWLGTYATPEDAALAYDRTAFKLRG 113
                           8********.**********8...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-3062123No hitNo description
PfamPF008473.8E-1363113IPR001471AP2/ERF domain
SMARTSM003803.4E-3463127IPR001471AP2/ERF domain
PROSITE profilePS5103224.02663121IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2263122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-3063122IPR001471AP2/ERF domain
PRINTSPR003671.6E-126475IPR001471AP2/ERF domain
PRINTSPR003671.6E-12103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MHQENSTQFD LSILDSPLEH QFNGFNLESI SSDRSINHTW EKIDKNEDNI PQSSSQAPNN  60
WKRYRGVRRR PWGKFAAEIR DPKRKGARLW LGTYATPEDA ALAYDRTAFK LRGTRALLNF  120
PHLIGTNVAE LNRVRPKRRS RSTEIIKEEE IPSPKRRNPQ LINSIAKVNS IIHMFEITSL  180
AFHPQGKSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2962121463ATERF1
3gcc_A3e-2962121463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012451
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345610.11e-138PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLM1AA151e-137M1AA15_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000180851e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-40ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]