PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012267
Common NameLOC102603647
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 330aa    MW: 36061.2 Da    PI: 8.0748
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012267genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.37.9e-3351107358
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                            v+YkeClkNhAa+lG+havDGCgEf+p + ++ +++++lkCaACgCHRnFHRr++e
  PGSC0003DMP400012267  51 VVVYKECLKNHAANLGTHAVDGCGEFLPIPAANpADPTSLKCAACGCHRNFHRRDPE 107
                           589***************************9999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-2752106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2154104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.92354105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-2954105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.94E-17180245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-27183246IPR009057Homeodomain-like
TIGRFAMsTIGR015654.6E-24188244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MELNTNTTTA PAAAIKTPEL AETETPSRIQ QPKPFPFSNG VLKRKNHHPV VVVYKECLKN  60
HAANLGTHAV DGCGEFLPIP AANPADPTSL KCAACGCHRN FHRRDPEEPP PIATAAIEYQ  120
PHHRHHPPPP CGDHSSPNSP SPPPISSAYY PASAPHMLLA LSAGFSGEKN QNLPTSTTPV  180
AVANSNGRKR FRTKFTPDQK MKMLKFAEKV EWKMQKRDED LVNNFCNEIG VEKGVLKVWM  240
HNNKTTSVSG KKLDQPITGN GDHQNGNTNN IVNGFCIVSR NNTTHPDQNN TDSEFHIHHE  300
SSMNDDNKKE HLSFDANNVV VTNGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-191892491878ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012267
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357111.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG04e-66ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLM1A9K20.0M1A9K2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000178400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.15e-59homeobox protein 30
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]