PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011252
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 393aa    MW: 44153.2 Da    PI: 6.5147
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011252genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.7e-116095540
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40
                          k+ rr+++NReAAr+sR+RKka++++Le+   +L +
  PGSC0003DMP400011252 60 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQ 95
                          788*************************86555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.6E-556116IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.69158100IPR004827Basic-leucine zipper domain
PfamPF001701.0E-76090IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-660100No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-762103No hitNo description
PROSITE patternPS0003606378IPR004827Basic-leucine zipper domain
PfamPF141441.8E-30147222IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGMWDDFNAS CPSTSATMIL EVEKCLEDQI PIMIETEDTS HGTVGTSNRY EAETSKPIEK  60
VLRRLAQNRE AARKSRLRKK AYVQQLENSK LKLIQLEQEL DRARKQGLHV GAGLDASQLS  120
YSGTASSGTA VFDTEYGQWV EEQNRQTNDL RNALHHSQIS EAELRIIVDG CLNHYFELFR  180
VKATAAKADV LYIMSGMWKT SAERFFMWIG GFRPSELLKV LTPHPELLTE QQLREVCNLR  240
QSCQQAEDAL SQGMVKLHQI LGEAVAAGRL GEGNYSLPQM GPAIEKLEAL VRFVNQVVSH  300
IGFSFLSIDV LAFKVISINF MSYAPVKDSE YTYSTLKGKM GEADHLRQET LQQMSRILNT  360
HQAAQGLLAL GEYFEQLRVL SSHWATRLHE PA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00642SELEXTransfer from LOC107771743Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011252
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankS738270.0S73827.1 Solanum tuberosum mas-binding factor MBF3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275332.10.0mas-binding factor MBF2
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLM1A7B60.0M1A7B6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000162350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-146TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  5. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  6. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]