PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009571
Common NameLOC102584731
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 345aa    MW: 37805.5 Da    PI: 9.916
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009571genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.7e-1648132186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W++  v +L+ea++ ++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l
  PGSC0003DMP400009571  48 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsarvNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRL 131
                           5***********************************9987778888999999******************99984.....57****999 PP

              trihelix  86 e 86 
                           +
  PGSC0003DMP400009571 132 D 132
                           6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1946132No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDKEAGNHHH HQNQNHGISN KDEFSPRIKP PQNYHVATGN SDRLKRDEWS EGAVSCLLEA  60
YEAKWILRNR AKLKGQDWED VAKHVSARVN STKSPKTQTQ CKNKIESMKK RYRSESATAA  120
DASSWPLYPR LDLLLRGNNA SAASSSLIPP PLPPAAPPNT NCVIDAVEPT QPPIVLPPPP  180
PPLPPSPALP IGNGDQNSHG SNGLDRGIKQ EDILMDAKLS DNAAAADHKN ATATNSSSTP  240
ALYSDNKSKS KLRSKNKRKR AVEGWEIGES IRLLAEVVVR SEQARMETMR DIERMRAEAE  300
AKRGEMDLKR TEIIANTQLE IAKLFASITK GSVDSSLRIG RSSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347663.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X1
TrEMBLM1A3D70.0M1A3D7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000138290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-90sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]