PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008052
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 299aa    MW: 32725.9 Da    PI: 6.6442
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008052genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.82.7e-3449103155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           +prlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  PGSC0003DMP400008052  49 RPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKAMGVKGLTLYHLKSHLQKYRL 103
                           59****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-3246104IPR009057Homeodomain-like
PROSITE profilePS5129413.0346106IPR017930Myb domain
SuperFamilySSF466893.76E-1748104IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-2450104IPR006447Myb domain, plants
PfamPF002492.4E-951102IPR001005SANT/Myb domain
PfamPF143791.0E-26147192IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MYSSLGIDGN GGVNEYHHHH HLHSLQSSLS GEMTNLAGDA CLVLTADHRP RLRWTAELHE  60
RFVDAVTQLG GPDKATPKTI MKAMGVKGLT LYHLKSHLQK YRLGKQPKEA AESYKDESCV  120
AESQDTSPSA LGSSKVVAQD INDCGYQVTE AFRVQMEVQR RLHEQLEVQR HVQLRIEAQG  180
KYLQTILEKA CKVLNYTSVE SPDLDTAREQ LSELAIKGAN NCDGIVPVSS LPEVVSSYEN  240
KNASDMPASI GDCLPSNTSM ASPTSIGALK KRPRALANGD VLPVENNMTQ VQWMMTNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1949105258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008052
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349927.10.0PREDICTED: myb family transcription factor APL-like isoform X1
SwissprotQ8LAJ72e-98PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLM0ZZT50.0M0ZZT5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000115980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.12e-97G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]