PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006077
Common NameLOC102578710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SRS
Protein Properties Length: 187aa    MW: 21300 Da    PI: 8.4052
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006077genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702165.72.6e-51141453153
                DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 
                           s++++C+dCGnqakkdC + RCRtCCk++g++C+thvkstW+p++ rr r++++ ++        ++ ++kr+re+      al +t  
  PGSC0003DMP400006077  14 SNNKRCEDCGNQAKKDCLYFRCRTCCKTQGYQCQTHVKSTWIPVSTRRPRHHHQISTV-------QQPNPKRHREN-----HALLQTG- 89 
                           56789********************************************976665543.......44466777764.....3333333. PP

                DUF702  92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                  e e ++lP+evs +a+frcvrvssvd+  +++aYqt+v+i+GhvfkGiLydqG +
  PGSC0003DMP400006077  90 ------GEEEEEELPSEVSLPAIFRCVRVSSVDNVVDQYAYQTSVKIAGHVFKGILYDQGNN 145
                           ......2345678***********************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.2E-5317145IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.6E-251960IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.4E-2597143IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MMMREDEGIV ISSSNNKRCE DCGNQAKKDC LYFRCRTCCK TQGYQCQTHV KSTWIPVSTR  60
RPRHHHQIST VQQPNPKRHR ENHALLQTGG EEEEEELPSE VSLPAIFRCV RVSSVDNVVD  120
QYAYQTSVKI AGHVFKGILY DQGNNNMPNQ TSSRGFHHQQ QLANFTPPIS PTFMPGMQLF  180
QYPKSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-108HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360632.11e-140PREDICTED: protein SHI RELATED SEQUENCE 3-like
SwissprotQ9LQZ52e-44SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLM0ZV221e-140M0ZV22_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000087671e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41562445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.15e-45Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]