PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002457
Common NameLOC102580219
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 284aa    MW: 31700.2 Da    PI: 7.0503
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002457genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.84.7e-3135166289
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 
                            g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ +                         
  PGSC0003DMP400002457  35 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLqippgslnpnlypmlgiggnshqit 123
                           689*************************************************************6666655555555555543322211 PP

                   TCP  66 ......ssssaseceaesssssasnsssg..............................k 89 
                                 +                 n+s++                              +
  PGSC0003DMP400002457 124 snkeglN-----------------NKSINwddnvvpleppnnnnnnalgynsnflkwdpS 166
                           1111110.................112223333333333333233344444444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.5543795IPR017887Transcription factor TCP subgroup
PfamPF036342.0E-2837148IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MITREEKANE SKASSSTTSW TRLKDPRIVR VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP  60
TAIQLYDLQD RLGLNQPSKV VDWLLDAAKH EIDELPPLQI PPGSLNPNLY PMLGIGGNSH  120
QITSNKEGLN NKSINWDDNV VPLEPPNNNN NNALGYNSNF LKWDPSNLSL AHSENSLSHQ  180
HQDIHHNFNL MSSMPLGSHH QVVVYPPGLP QFFHQHNIVG PSSSSEFDPK EINFQMLSNN  240
SGSENPMSSS TNSFRHSIDS TSQSIRPFHF LPSQNCDETE PSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-194296155Putative transcription factor PCF6
5zkt_B3e-194296155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-154HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338357.10.0PREDICTED: transcription factor TCP17
TrEMBLM0ZLP70.0M0ZLP7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000034530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-47plastid transcription factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]