PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 283aa    MW: 33009.1 Da    PI: 7.263
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002220genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.23.5e-49191442128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                            pGfrFhPtdeelv +yL++kve+k++++ e ik++diyk++PwdLpk v  e+ke+y+F+ r +ky+++ r+nr+tksg+Wkatg dk
  PGSC0003DMP400002220  19 LPGFRFHPTDEELVGFYLRRKVENKRINM-ELIKHIDIYKYDPWDLPKLV--EDKEMYYFCMRGRKYKNSVRPNRVTKSGFWKATGIDK 104
                           69***************************.99***************655..789********************************** PP

                   NAM  91 evlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                           +v+s++++   +glkk Lv+y+g+a kg+ktdW+mhe+rl
  PGSC0003DMP400002220 105 PVYSSTTQCiiIGLKKCLVYYRGSAGKGTKTDWMMHEFRL 144
                           ****74443559**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-5413165IPR003441NAC domain
PROSITE profilePS5100551.80718165IPR003441NAC domain
PfamPF023651.4E-2420144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MADEIKTMSK EGNEEDVILP GFRFHPTDEE LVGFYLRRKV ENKRINMELI KHIDIYKYDP  60
WDLPKLVEDK EMYYFCMRGR KYKNSVRPNR VTKSGFWKAT GIDKPVYSST TQCIIIGLKK  120
CLVYYRGSAG KGTKTDWMMH EFRLPPTSNT NHQAEVWTLC RIFKRSTSTY KRSSYSTQEV  180
KHLLGDASSK ACSMESDENS TDHDHSNSFK DISFQQQNYN NYEAQMDEIR NQQNLISHDS  240
TFPSSSSISF WNTYSTQEEY LFGDHGNKWD DLKSIVDLAT MM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-471817117171NO APICAL MERISTEM PROTEIN
1ut4_B1e-471817117171NO APICAL MERISTEM PROTEIN
1ut7_A1e-471817117171NO APICAL MERISTEM PROTEIN
1ut7_B1e-471817117171NO APICAL MERISTEM PROTEIN
4dul_A1e-471817117171NAC domain-containing protein 19
4dul_B1e-471817117171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002220
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-168HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159594.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-89NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLM0ZL440.0M0ZL44_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000030820.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-86NAC domain containing protein 42
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]