PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001571
Common NameLOC102582354
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 313aa    MW: 34997.4 Da    PI: 6.4452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001571genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14111157354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  PGSC0003DMP400001571 111 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 157
                           79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11111157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-15112178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-15112165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-5121160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MHPQSFMNPV HFQSNSEMLP WSIPPVQPYL NPVHHHDQSF LLPPSPSAYG LFNRNTTMDQ  60
QHLRFISDSL VGQVVHHHNQ PGSIAPFGLQ AELQKMSAQE IMDAKALAAS KSHSEAERRR  120
RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLISETSLV PTEIDELTVD  180
NATSDEDGKF LIKASLCCED RSDLLPDLIK TLKALRLKTL KAEITTLGGR VRNVLFITGD  240
DYYCDDSNNN RDHIDPCTSG DDEDTQMMQQ QPQYCISSIQ EALKAVMEKS SGDDSASTSV  300
KRQRTNSINI LS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362528.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y15e-93BH030_ARATH; Transcription factor bHLH30
TrEMBLM0ZJQ70.0M0ZJQ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000021550.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]