PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.4828s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 321aa    MW: 35802.9 Da    PI: 5.2851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.4828s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19127175355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             ++GVr+++ +g+W+AeIrdp++   rkr++lg+f taeeAa  +++a+ +l+g
  SapurV1A.4828s0010.1.p 127 FRGVRQRP-WGKWAAEIRDPTQ---RKRVWLGTFNTAEEAATVYDRAAVELKG 175
                             8*******.**********965...5***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.56E-33125183No hitNo description
PROSITE profilePS5103223.828126183IPR001471AP2/ERF domain
SMARTSM003804.8E-38126189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-30126184IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22127184IPR016177DNA-binding domain
PRINTSPR003671.9E-10127138IPR001471AP2/ERF domain
PfamPF008474.9E-12127175IPR001471AP2/ERF domain
PRINTSPR003671.9E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLTHNPNTMS VQTKVNSTEH VFATKKLIQN QQHHPSSRIR GQRIVRIIHT DPDATDSSSD  60
EEEEEDQERK FVKRAKTRVS EIRLLEQETA APAAPSPRTS NDHHRHSTRK RPSSRLPVSD  120
VTRRKNFRGV RQRPWGKWAA EIRDPTQRKR VWLGTFNTAE EAATVYDRAA VELKGPDAVT  180
NFPTKSVVTV KANDDGPDVQ CGSCDSPSSS GVNVMPSLAS VLRYEELAPF DPVLTEMSKV  240
IDDHGESCES PFSANVMTSP TSVLRYEEST LFDSLAYGDV DAFGFKIDVP SGLPDLMLPV  300
NFVNDEEFVD FDDFLVEAIC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21125185465ATERF1
3gcc_A2e-21125185465ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.4828s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325634.20.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLB9INK50.0B9INK5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s15190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-35cytokinin response factor 4