PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3106s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 228aa    MW: 24799.2 Da    PI: 6.6781
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3106s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1951101155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             ++y+GVr++k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  SapurV1A.3106s0010.1.p  51 PRYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYEMPEMAAAAYDVAALHLRG 101
                             68*******9.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1351101IPR001471AP2/ERF domain
CDDcd000182.69E-2151110No hitNo description
PROSITE profilePS5103222.97252109IPR001471AP2/ERF domain
SMARTSM003801.5E-3552115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-3152110IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2152110IPR016177DNA-binding domain
PRINTSPR003679.4E-135364IPR001471AP2/ERF domain
PRINTSPR003679.4E-1391111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MCRSLSAVIV LRSLICTRTL PPRHSSVDKT FLLLATMEGR TRDGHLGISS PRYRGVRQRK  60
WGKWVSEIRE PGKKTRIWLG SYEMPEMAAA AYDVAALHLR GRGAQLNFPE MVDSLPRPVS  120
SSTEDVQMAA QEAALLFRRP IKCAEGVSGS SSGGGGGGGG LGPVRVGLSP SQIQAINEAP  180
LDSPKMWMEL GGARLWNEPP AMGGDIDVEL SDEWGEMEHE HDSIWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1753114668ATERF1
3gcc_A6e-1753114668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3106s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559380.0EF155938.1 Populus trichocarpa TINY-like protein (TINYL19) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376157.21e-103ethylene-responsive transcription factor ERF022
SwissprotQ9LQ285e-51ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA9PL881e-102A9PL88_POPTR; TINY-like protein
STRINGPOPTR_0013s10330.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.19e-45ERF family protein