PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3015s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 123aa    MW: 13928.9 Da    PI: 8.499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3015s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-11490187
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkl 84
                            f+kvl   dv+ +  l++p + +e+   gg+  +s++l+++d+ g+   +++ +++ksg     vl++GW +Fv++ gL++gD vv+ +
  SapurV1A.3015s0030.1.p  4 FCKVLRATDVGVK--LSFPTHGLEHLdfGGN--NSVDLRVKDSCGELRVIRC-WKRKSGDhdkPVLSTGWLKFVDDYGLRVGDKVVLLR 87
                            7888888888876..899*999966688766..799*********9999999.54444446889**********************996 PP

                            -SS CS
                      B3 85 dgr 87
                            +++
  SapurV1A.3015s0030.1.p 88 EDD 90
                            654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-13392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-14392IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-144103No hitNo description
PfamPF023622.4E-8491IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEVFCKVLRA TDVGVKLSFP THGLEHLDFG GNNSVDLRVK DSCGELRVIR CWKRKSGDHD  60
KPVLSTGWLK FVDDYGLRVG DKVVLLREDD HNLGSQFRIE AKRKIVLLGR EDWGEVTRAT  120
NY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3015s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303154.33e-60uncharacterized protein LOC7480761
RefseqXP_024452704.13e-60uncharacterized protein LOC112326846
TrEMBLA0A2K2B0477e-59A0A2K2B047_POPTR; Uncharacterized protein
STRINGPOPTR_0003s01220.12e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414