PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2860s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 206aa    MW: 22119 Da    PI: 7.0497
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2860s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.61.1e-292103197
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C++ Cvl+ ++     p++q  ++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++
  SapurV1A.2860s0030.1.p   2 SCNGCRVLRKGCSETCVLRSCMhwitnPDAQGYATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWS 88 
                             6*************************999********************************************************** PP

                  DUF260  83 lqqqleqlkaelall 97 
                             ++++++q+++e++l 
  SapurV1A.2860s0030.1.p  89 GNWHVCQEAVETVLS 103
                             *********998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.9561107IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SCMHWITNPD AQGYATLFLA KFFGRSDLMS LISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQEAVET VLSGGALRPL HGILTGFLAP  120
NCDESSDGFS AAVHDMAWNQ SKSFAKESNN EVVSDHHVNP CLARGIGGRG KRGREAVSFY  180
TGGESETISF ESSGGDQKRL LNLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2860s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738742e-31AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721442e-31AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229762e-31AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301153.31e-132LOB domain-containing protein 39
SwissprotQ9FN113e-64LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A1L6K5D31e-132A0A1L6K5D3_POPTO; LOB domain-containing protein 39-like
STRINGPOPTR_0002s12020.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-66LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]