PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2778s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 263aa    MW: 29276.7 Da    PI: 6.1258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2778s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20131180255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+  ++g
  SapurV1A.2778s0010.1.p 131 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEEAARAYDKAAIDFRG 180
                             59*******.**********94....36**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.211131188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-33131188IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23131189IPR016177DNA-binding domain
CDDcd000182.43E-34131188No hitNo description
SMARTSM003807.7E-38131194IPR001471AP2/ERF domain
PfamPF008471.9E-14131180IPR001471AP2/ERF domain
PRINTSPR003673.5E-12132143IPR001471AP2/ERF domain
PRINTSPR003673.5E-12154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MQRSSKRSRI SEAPPETVFS PPAVPPQRMT NEQEVAVMVA ALKNVVSGTA SMDFSREINS  60
ISMPLNASHS QFGSTSSGGD DFYNYILPPS SDLDTCGVCK IKGCLGCNFF PPNQEDKKDD  120
KKGKRKRVKK NYRGVRQRPW GKWAAEIRDP RKAARVWLGT FNTAEEAARA YDKAAIDFRG  180
PRAKLNFPFP ESGIASFEES KEKQEKQQEI SDSRSEFEAE KGEDNEFWDN TGDEELREWM  240
KMLMDFGNGD SSTASAAATI GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-23130189464ATERF1
3gcc_A3e-23130189464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2778s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000462.11e-152PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2I4KKP21e-140A0A2I4KKP2_POPTR; ERF family protein
STRINGPOPTR_0009s10470.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-34redox responsive transcription factor 1