PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2694s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 191aa    MW: 20717.2 Da    PI: 8.8378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2694s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-173684355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++GVr ++ +gr+v+eIr p   gk++r++lg+fg++e+Aa+a++ a+  l+g
  SapurV1A.2694s0020.1.p 36 FHGVRKRS-WGRYVSEIRLP---GKKTRVWLGSFGSPEMAARAHDSAAFFLRG 84
                            79***888.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-293598IPR001471AP2/ERF domain
PROSITE profilePS5103219.3883592IPR001471AP2/ERF domain
CDDcd000181.71E-263694No hitNo description
SuperFamilySSF541718.5E-183694IPR016177DNA-binding domain
PfamPF008471.0E-103684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-273694IPR001471AP2/ERF domain
PRINTSPR003672.6E-73647IPR001471AP2/ERF domain
PRINTSPR003672.6E-75874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSINHEPPGL KTNPHASDPA SKRSSRKRTG QPDAPFHGVR KRSWGRYVSE IRLPGKKTRV  60
WLGSFGSPEM AARAHDSAAF FLRGKSASLN YPDSVGSLPR PESCSSKDIQ LAAAKAATGF  120
EKARVGNRVG IEDSESGGEP ESSIWLGLGE IETVSYEEVK RTPLFCPLRF DSVSGNDEML  180
YMNDQGAFIC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-132992872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2694s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559340.0EF155934.1 Populus trichocarpa TINY-like protein (TINYL15) gene, complete cds.
GenBankEF1559350.0EF155935.1 Populus trichocarpa TINY-like protein (TINYL16) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006388007.21e-113ethylene-responsive transcription factor ERF023
TrEMBLA0A2K1WQR61e-112A0A2K1WQR6_POPTR; Uncharacterized protein
TrEMBLA9PL851e-112A9PL85_POPTR; TINY-like protein
STRINGPOPTR_0409s00200.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-31ERF family protein