PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2549s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 251aa    MW: 27942.7 Da    PI: 6.0794
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2549s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.92e-55691721101
                   NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                             ql+sfw++q   i+k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t
  SapurV1A.2549s0040.1.p  69 QLQSFWANQykeIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 155
                             89******999999************************************************************************* PP

                   NF-YC  85 rtdifdflvdivprdel 101
                             rtdifdflvdivpr++l
  SapurV1A.2549s0040.1.p 156 RTDIFDFLVDIVPREDL 172
                             **************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.04E-3263163IPR009072Histone-fold
PfamPF008081.5E-2191154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.5E-3892169IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEQGHGQPPA IVSSASQLQY GTSPYQPNQM PAASNPGSVT GQPLGAQLAQ HQLAYQQIHQ  60
QQEQQLQQQL QSFWANQYKE IDKVTDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFAR  120
ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI  180
PRGTMPVGGP VDALSYCYMP PPHAPQVGAP GMIMGKPVMD PAMYAQQSQP YMAQHVWPQG  240
SEQQQSPSDH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B7e-4184169994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C7e-4184169994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036760.11e-166PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1
RefseqXP_011036761.11e-166PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X2
RefseqXP_011036762.11e-166PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1
RefseqXP_011036763.11e-166PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1
SwissprotQ8L4B25e-89NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5GG471e-164U5GG47_POPTR; HEME ACTIVATED protein 5C
STRINGPOPTR_0005s03790.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.46e-80nuclear factor Y, subunit C9