PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2268s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 297aa    MW: 32411.7 Da    PI: 4.8668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2268s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-1978128155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a+++++g
  SapurV1A.2268s0010.1.p  78 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAEEAALAYDEAARAMYG 128
                             56*****999.**********8...2.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-3278138No hitNo description
PfamPF008477.3E-1478128IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2179137IPR016177DNA-binding domain
PROSITE profilePS5103221.95779136IPR001471AP2/ERF domain
SMARTSM003806.4E-3679142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3179137IPR001471AP2/ERF domain
PRINTSPR003671.6E-108091IPR001471AP2/ERF domain
PRINTSPR003671.6E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGTLDQVSKV TSMSMDSTKK RKRVSNKSVA ETLKKWKEYN EYLDSQGDGG NKPARKVPAK  60
GSKKGCMKGK GGPENSVCNY RGVRQRTWGK WVAEIREPNR GPRLWLGTFP TAEEAALAYD  120
EAARAMYGPC ARLNVPDVLN STSSLKDNFS PATPSCCSPA ASSADSATTS THSEVCVYED  180
PKQNVSSQAE VLAHHISSQQ HIEDGSQGVD ISSQQPIEDG SQGVENSTPR DDELGSQLEN  240
PLWTPSEMPL WSPSEMPLWT NDWHNYSRDE MFSFDELLGD IDAGSTGAEG YFNVGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1879136260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2268s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9542910.0AY954291.1 Populus alba x Populus bolleana dehydration responsive element binding protein mRNA, complete cds.
GenBankGU2078630.0GU207863.1 Populus hopeiensis DREB2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465135.11e-151dehydration-responsive element-binding protein 2A isoform X2
SwissprotQ8LFR21e-53DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A2K1YW841e-150A0A2K1YW84_POPTR; Uncharacterized protein
STRINGPOPTR_0010s19100.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-36DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]