PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2173s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 182aa    MW: 19528.8 Da    PI: 7.3633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2173s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.2e-142676155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +++kG r++k +g+Wv+eIr p   gk+ r +lg++ t+e Aa a++ a  +l+g
  SapurV1A.2173s0020.1.p 26 KKFKGARRRK-WGKWVSEIRIP---GKQERLWLGSYSTPEAAAVAHDIASYCLRG 76
                            5899***988.**********8...556*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.29E-232686No hitNo description
SMARTSM003801.4E-262792IPR001471AP2/ERF domain
PROSITE profilePS5103221.3642786IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-162787IPR016177DNA-binding domain
PfamPF008471.0E-72776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-232786IPR001471AP2/ERF domain
PRINTSPR003672.6E-72839IPR001471AP2/ERF domain
PRINTSPR003672.6E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTGSSSSGGS SGSRMDRGSG ASADQKKFKG ARRRKWGKWV SEIRIPGKQE RLWLGSYSTP  60
EAAAVAHDIA SYCLRGPSSL ESLNFPLMLP ASVRDDMSPK SIQKAASDAG LAIDAQMILS  120
RSPENEVRIG AENVAINQGL ETELWEPAGG DSSNRRENWR GNNIGAREGE GLNISIEDYM  180
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-141586172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2173s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325945.32e-98ethylene-responsive transcription factor ERF020
TrEMBLA0A2K1WR074e-97A0A2K1WR07_POPTR; Uncharacterized protein
TrEMBLA9PLA04e-97A9PLA0_POPTR; RAP2-like protein
STRINGPOPTR_0019s10220.15e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.15e-47ERF family protein