PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2089s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 398aa    MW: 45001.4 Da    PI: 8.8387
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2089s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.7e-1325109696
                             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                             + ++ l+ + l +pkkf++++g +   s   tl+ + g  + v+l  +k  g+ ++ kGW eFv+   +++g f+vF ++g+s+f  
  SapurV1A.2089s0020.1.p  25 MVASILQDKKLKIPKKFVNKYGDE--LSSIATLTAPCGGIFLVEL--QKVNGKLWFHKGWHEFVECYSIRVGYFLVFLYEGKSNF-- 105
                             4455566677***********865..7779***************..999999***************************99999.. PP

                             EEEE CS
                      B3  93 vvkv 96 
                             +v++
  SapurV1A.2089s0020.1.p 106 NVHM 109
                             6665 PP

2B361.61.3e-19291384198
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             f+ +l ps+v +  +l +p +fa+++ + + ++   +tle  +g++W v++  + k+g+  l++GW eFv +n+L+egD+++F+l++
  SapurV1A.2089s0020.1.p 291 FQVILRPSYVYRGFLLHIPSSFARTFlNRV-TG--FVTLEVCDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIH 372
                             88999******************9995444.34..59999***********..66666677*************************9 PP

                             SSEE..EEEEE- CS
                      B3  87 rsefelvvkvfr 98 
                              +e  ++v +fr
  SapurV1A.2089s0020.1.p 373 AKEIVMKVAIFR 384
                             999989999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2016111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-2017111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-1520111No hitNo description
PROSITE profilePS5086311.09620113IPR003340B3 DNA binding domain
SMARTSM010192.0E-921113IPR003340B3 DNA binding domain
PfamPF023621.2E-924110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-26283384IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-26286389IPR015300DNA-binding pseudobarrel domain
CDDcd100172.51E-24289384No hitNo description
SMARTSM010193.8E-18291386IPR003340B3 DNA binding domain
PfamPF023623.6E-18291384IPR003340B3 DNA binding domain
PROSITE profilePS5086314.833291386IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSQSAGKPDG SDSTARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SIATLTAPCG  60
GIFLVELQKV NGKLWFHKGW HEFVECYSIR VGYFLVFLYE GKSNFNVHMY DLTVSEIKNP  120
CNSISQLQES SHDNPCLLPH EKDDGLKKIL GFRPPSLNLL SSLTSKNFNE YVHCNCTQST  180
YTAGLEKPHG RTDAFNLREK CQSSRDIGTQ FNGEELTSTE DGVGSIISGT TAKTRGSKRM  240
SENSIQTVKQ KSTRVKNTFE TLTRRQRAVT PEEKERTIRA AHMFRPDNPF FQVILRPSYV  300
YRGFLLHIPS SFARTFLNRV TGFVTLEVCD GKQWPVRCSF KDGKAKLGQG WTEFVWENNL  360
EEGDVCIFEL IHAKEIVMKV AIFRVLEDAV PPDQLSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-4625938717144B3 domain-containing transcription factor VRN1
4i1k_B1e-4625938717144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2089s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454808.10.0B3 domain-containing transcription factor VRN1 isoform X3
TrEMBLA0A2K2AUS20.0A0A2K2AUS2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-81B3 family protein