PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2070s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 455aa    MW: 50778.9 Da    PI: 6.2978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2070s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19221271256
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  SapurV1A.2070s0020.1.p 221 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 271
                             59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.45E-33220280No hitNo description
PROSITE profilePS5103222.932221278IPR001471AP2/ERF domain
SMARTSM003801.9E-39221284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32221279IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23221279IPR016177DNA-binding domain
PRINTSPR003679.5E-11222233IPR001471AP2/ERF domain
PfamPF008472.4E-12222271IPR001471AP2/ERF domain
PRINTSPR003679.5E-11244260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDSAKTNTGK SKKGVVDETQ RQRMDQDWQL DRGRKEADIS FERRQWKPDF DEASLSDRPS  60
KKIRSPERQE QTQSYANLAH QLPPFSVSPS SVSTKSLYPP SSSSSSGHQF PFALEGSNQP  120
TQFHQQFGTN PSSTIFRPPS QQQMISFAQN QQYGIAYPPF FTGESALANH HHHQQQQLFQ  180
YWNDAVNLSP RDRMMMMMNR LGPDGRPLFR PPIQPINTTK LYRGVRQRHW GKWVAEIRLP  240
RNRTRLWLGT FDTAEDAALA YDREAFKLRG ENARLNFPDL FLNKDKATST APSSSISSLP  300
TPSQSSTPKQ ARESLNLQVG TMPPPPPPPE QPQGDHTDDD SGLGSSGATV SDEVHAVAEG  360
TSAGEGISGS QEMAWGDMAE AWYNAIQAGW GPGSPVWDDL DNTNNILLQS HLPFVTPNQQ  420
QFDDSSDLQR QQDSMGSASS SSPPTKPFFW KDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20220278160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2070s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2140330.0AC214033.1 Populus trichocarpa clone POP046-C14, complete sequence.
GenBankEF1559420.0EF155942.1 Populus trichocarpa RAP2-like protein (RAP2L1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371578.20.0ethylene-responsive transcription factor ERF054
TrEMBLA0A2K1WSA90.0A0A2K1WSA9_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-55ERF family protein