PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2002s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 335aa    MW: 36752.2 Da    PI: 6.1162
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2002s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18250284135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             Cs+Cg  kTp+WR gp+g+ktLCnaCG++y++ +l
  SapurV1A.2002s0020.1.p 250 CSHCGIQKTPQWRAGPNGSKTLCNACGVRYKSGRL 284
                             *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-8713329IPR016679Transcription factor, GATA, plant
SMARTSM004017.0E-17244298IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.426244280IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-14245307No hitNo description
Gene3DG3DSA:3.30.50.102.2E-15248282IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.97E-15249297No hitNo description
PROSITE patternPS003440250275IPR000679Zinc finger, GATA-type
PfamPF003201.6E-16250284IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEYDEGALKT SFRKEMAVKF SPQVFDDFWA VNVTNGMSSD DFSVDELLDF SNENGFIEDE  60
EKPCVVSVSV SHEQETLMED KNNDRSPNLA VKEDFVSVPT GELCVPTDDI ASLEWLSHFV  120
EDSNSEYAAP FPAIVLPPEP GKESFVEQEK PAQTEPCFTT PVPAKARSKR TRTGVRVWPL  180
ASPSLTESST SSSSSTSSSS SSSAWLIHTK PGLDAEPLWL EKPVAKRMKK KPAFQSAASG  240
GGGSHSSRRC SHCGIQKTPQ WRAGPNGSKT LCNACGVRYK SGRLLPEYRP ACSPTFSKEL  300
HSNHHRKVLE MRRKKEILDQ PEPGVVQPVV PSFG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028683.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH571e-83GATA5_ARATH; GATA transcription factor 5
TrEMBLB9MXJ50.0B9MXJ5_POPTR; Zinc finger family protein
STRINGPOPTR_0005s11960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-74GATA transcription factor 5