PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1944s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 316aa    MW: 34687 Da    PI: 8.9
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1944s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017727323
                            ETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                            C++C+++F +   +  H+r+H
  SapurV1A.1944s0060.1.p  7 CKICNRRFANGKAMGGHMRSH 27
                            *******************99 PP

2zf-C2H211.10.0012257279123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kCp C k+F +   L  H ++H
  SapurV1A.1944s0060.1.p 257 FKCPFCEKVFDSGQALGGHKKVH 279
                             89**********99999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.785532IPR007087Zinc finger, C2H2
PfamPF139122.3E-8529IPR007087Zinc finger, C2H2
SMARTSM003550.21527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.284203230IPR007087Zinc finger, C2H2
SuperFamilySSF576672.06E-7203225No hitNo description
PfamPF139124.5E-10203227IPR007087Zinc finger, C2H2
SMARTSM003550.13203225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4249279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-7252279No hitNo description
PfamPF139122.6E-8257279IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.949257284IPR007087Zinc finger, C2H2
SMARTSM003550.016257279IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEKTRICKIC NRRFANGKAM GGHMRSHLAK LPLPPKPIPP QETYNTPNKS PSSSSSLNYP  60
LLGNKPTQSS RSILKQKVSA VSKPAPYDGE SETESTTKPT GRRSKRSLKS ADLKVAESMA  120
KVTESSEQVS SVSYLLAEED VALCLLMLSR DHEWSEDAKR VKKEVGECTK DHQYVNHEAE  180
SDDEKENYLL GAAQTKLKSQ GKYKCETCKR GFRSYQALGG HRASHKKIKT HDEHEEGSGN  240
GCGGGDNHRI TAGKRIFKCP FCEKVFDSGQ ALGGHKKVHF SYLPVTNARI SIDLLDLNIP  300
ALEGSTHDDG EVSEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1944s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453144.11e-156zinc finger protein ZAT9
TrEMBLA0A3N7FSN91e-155A0A3N7FSN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s00800.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-28C2H2-like zinc finger protein