PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1849s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 124aa    MW: 14395.5 Da    PI: 10.2798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1849s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.5e-12590189
                            EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                            f k+l + d   ++r+v++ + ++ +       ++ l+++de+g++W++++++  ++s+r  l++ W  Fv++++Lk+gD++ + ld++
  SapurV1A.1849s0040.1.p  5 FTKKLNNIDI--ERRMVISENLIKGFpR---GHEVYLKFKDEDGKVWTFRCRVpPGGSSRPSLSGDWFLFVRSKQLKVGDVIEIALDRE 88
                            5566633333..3468999999877742...35678***************9988888889*********************9999876 PP

                            SE CS
                      B3 88 se 89
                            ++
  SapurV1A.1849s0040.1.p 89 KD 90
                            44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.9661105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-15295IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-13389No hitNo description
SuperFamilySSF1019364.71E-13389IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00115105IPR003340B3 DNA binding domain
PfamPF023621.5E-91590IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MERIFTKKLN NIDIERRMVI SENLIKGFPR GHEVYLKFKD EDGKVWTFRC RVPPGGSSRP  60
SLSGDWFLFV RSKQLKVGDV IEIALDREKD RAGVDQFTIR VSKPTYAYND KPNVFYNRDL  120
RPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1849s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.14e-55PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AZU87e-56A0A2K2AZU8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00440.11e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527