PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1528s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 258aa    MW: 28474.4 Da    PI: 6.5163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1528s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-1870120155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr +  +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++ a++ ++g
  SapurV1A.1528s0030.1.p  70 PSYRGVRMRQ-WGKWVSEIRQPKK---KSRIWLGTFPTPEMAARAHDVAALTIKG 120
                             57*****998.**********854...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-3270130No hitNo description
PfamPF008473.9E-1270120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-3271129IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2171129IPR016177DNA-binding domain
SMARTSM003805.8E-3871134IPR001471AP2/ERF domain
PROSITE profilePS5103223.11771128IPR001471AP2/ERF domain
PRINTSPR003673.1E-107283IPR001471AP2/ERF domain
PRINTSPR003673.1E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEASLNILCD AQTTTFSFSS PSSSSSSITS SLPSPLMKSP RKQDQPDQDP KNNNESSEKA  60
KSGGNAGRHP SYRGVRMRQW GKWVSEIRQP KKKSRIWLGT FPTPEMAARA HDVAALTIKG  120
QSAHLNFPEL AHEFPRPASS SPKDIQAAAA LAASLSRKTS QKGRETEAGE ELVLPRSPGS  180
ALASNEKQEY SLSSPLRDDD GDAFIDLPDI LQDTSHQFDE FCYRPSWQLV GAETSDIGFW  240
HHEEPSLWEY HSSRNIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1764134775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1528s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559270.0EF155927.1 Populus trichocarpa TINY-like protein (TINYL8) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368997.21e-127ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ73e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2K2BY831e-125A0A2K2BY83_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15550.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]