PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1488s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 549aa    MW: 60564 Da    PI: 6.2008
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1488s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like217.3e-071651922350
                 G2-like  23 GsekAtPktilelmkvkgLtlehvkSHL 50 
                             G  +A+Pk+il+lm+ + Lt+e+vk  L
  SapurV1A.1488s0020.1.p 165 GLYEAVPKKILDLMNAEKLTRENVKYRL 192
                             7789********************9655 PP

2Response_reg58.73.2e-20139825109
                             EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                              v+++++++ al++l+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + +  Ga  +l Kp+ +eel +
  SapurV1A.1488s0020.1.p  13 AVTTTSQATTALRMLRENKnkFDMVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHGACYYLLKPVRIEELKT 98 
                             68999**********888778*******************87754.558***********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004484.1E-121100IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.0661104IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.3E-304126No hitNo description
SuperFamilySSF521729.96E-2513112IPR011006CheY-like superfamily
PfamPF000723.7E-171399IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.44E-2014104No hitNo description
Gene3DG3DSA:1.10.10.604.5E-5165196IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MLDLLNKWVV DSAVTTTSQA TTALRMLREN KNKFDMVISD VHMPDMDGFK LLELVGLEMD  60
LPVIMLSANG DPKLVMKGIT HGACYYLLKP VRIEELKTIW QHLIKRKKSD NKDRNSLDNR  120
DKPDEGPDQK LNKKRKDQNG DEDEDPDEDE DEHENEDPTT QKKPGLYEAV PKKILDLMNA  180
EKLTRENVKY RLYLKRISTV ANQQANRVAA LGSSDASYLQ INSMSRLGLH NLAGSAQFHS  240
TPFRSLPSSG MLDRLNSPPV LGIHGLPSPG VIQLGHVQTA PHYANGPSHF QTAGHPGNNG  300
NLLQGMPMPL ELDQIQSNKD HGRCNDNWSN AVQSNGVQSN SLTLNDCFKR SILHPSAIRE  360
SMSTMALQSR NNPCDVSSIS TLPIHLQDSK ADLPCQVGVA TVSSNAGQLI NNGPLGWDDH  420
RQDDPYHSNG LSNSINSAIP INGNGNPNGC NLDANSLFFQ RTTRFSSTGL SNFVDTSLMK  480
HNEVECSAME TLVRSRDGYL PSQEKPQDGS VLNNFGSLED LVSVMVNQAS LHVPVHSCRD  540
DFVFPVLY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1488s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081440.0FN908144.1 Populus x canadensis mRNA for putative B-type response regulator 22 (rr22 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459850.10.0two-component response regulator ARR12 isoform X1
SwissprotA2X1N25e-89ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8056e-89ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLD7GN490.0D7GN49_POPCA; Two-component response regulator
STRINGPOPTR_0006s27800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.19e-79response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]