PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1479s0050.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 238aa    MW: 26444.9 Da    PI: 4.7767
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1479s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.1e-123783252
                     AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52
                             ykGVr+++ rg + AeI d +     r  r +lg+  taeeAa+aa +a+k+
  SapurV1A.1479s0050.1.p 37 FYKGVRRRS-RGEYSAEIGDpF-----RkIRLWLGTCTTAEEAAAAAYKAKKE 83
                            7*****888.8*********66.....45******************999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-103787IPR016177DNA-binding domain
SMARTSM003804.7E-53796IPR001471AP2/ERF domain
PROSITE profilePS5103213.4723794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-143880IPR001471AP2/ERF domain
PfamPF008479.0E-53883IPR001471AP2/ERF domain
PRINTSPR003671.4E-53849IPR001471AP2/ERF domain
PRINTSPR003671.4E-56076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
KSSIVISSFN SQQTWVRLIL GSRIPLNSAR FPYPSPFYKG VRRRSRGEYS AEIGDPFRKI  60
RLWLGTCTTA EEAAAAAYKA KKEEFDNKMA LESPNNLHID TKVVSEEFNG LCFHPSPSSV  120
LAVPTICSLG HGLESNVEMV SKEWNIESSI KEESTAEMIG ESSEKRALSP SVRQEFLGFF  180
YQQSQIGQFF DGFVNGEYFS VCDKIEPISS PMDGVMDLPN IELETTLAFV EGILNFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1479s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2135398e-37AC213539.1 Populus trichocarpa clone POP003-I11, complete sequence.
GenBankAC2142158e-37AC214215.1 Populus trichocarpa clone POP028-D10, complete sequence.
GenBankAC2145998e-37AC214599.1 Populus trichocarpa clone POP063-M17, complete sequence.
GenBankAC2164628e-37AC216462.1 Populus trichocarpa clone ACSB1245-D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374367.22e-84ethylene-responsive transcription factor ERF073
TrEMBLA0A2K1XID24e-83A0A2K1XID2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06470.13e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-09related to AP2 6