PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1446s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 111aa    MW: 12997 Da    PI: 10.6606
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1446s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.3e-12690289
                            EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                             k+l + d   ++r+vl+ + ++ +    +ee   l+++de+gr+W++++++  ++s+r  l++ W  Fv++++Lk+gD++ + ld+++
  SapurV1A.1446s0030.1.p  6 TKKLNNIDI--ERRIVLSENLIKGFpR-GHEE--YLKFKDEDGRVWTFRCRVpPGGSSRPALSGDWFVFVRSKQLKVGDVIEIALDREK 89
                            555533333..3457888888877742.3333..6***************9988888889*********************99998765 PP

                            E CS
                      B3 89 e 89
                            +
  SapurV1A.1446s0030.1.p 90 D 90
                            4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.2631103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-14290IPR015300DNA-binding pseudobarrel domain
CDDcd100179.34E-12389No hitNo description
SuperFamilySSF1019362.55E-12489IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00125103IPR003340B3 DNA binding domain
PfamPF023621.5E-91690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MEKIFTKKLN NIDIERRIVL SENLIKGFPR GHEEYLKFKD EDGRVWTFRC RVPPGGSSRP  60
ALSGDWFVFV RSKQLKVGDV IEIALDREKD RSGVDQFTIR FKKQLDRKRN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1446s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.15e-57PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AZU24e-56A0A2K2AZU2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00440.14e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527