PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1425s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 280aa    MW: 31487.4 Da    PI: 6.6805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1425s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20132182255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ kl+g
  SapurV1A.1425s0060.1.p 132 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTALEAARAYDRAAFKLRG 182
                             7********.**********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-33131191IPR001471AP2/ERF domain
SMARTSM003802.1E-37132196IPR001471AP2/ERF domain
CDDcd000181.30E-31132190No hitNo description
PROSITE profilePS5103224.566132190IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-23132191IPR016177DNA-binding domain
PfamPF008471.2E-14132182IPR001471AP2/ERF domain
PRINTSPR003678.4E-11133144IPR001471AP2/ERF domain
PRINTSPR003678.4E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
AFPGFFDSPD PSFFEFTSVF SPAQDNKTNI FEFEAKPEII DLSTPKPLDS TSHLNIQPSS  60
STSSFELVKP QIISQPSNNF FYEESRPGVH PTRKPSLKIS LPGKKSEWIQ FSNQDPQPLD  120
DNSGVAVEAK RHYRGVRQRP WGKYAAEIRD PNRRGSRVWL GTFDTALEAA RAYDRAAFKL  180
RGSKAILNFP LEAGKCDVRA NEEGERKRLR ECDAEEVEDV KRVMRVVKRE EPERDVPLTP  240
SCWTAVWDHC GDSNGVFNVP PLSPLSPHPP LGFSQLMVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-29131191161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-29131191464ATERF1
3gcc_A9e-29131191464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1425s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2209740.0JX220974.1 Populus x canadensis cultivar Nanling895 ERF5-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368979.21e-163ethylene-responsive transcription factor 6
SwissprotO803414e-67EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLJ7LJY71e-174J7LJY7_POPCA; ERF5-2
STRINGPOPTR_0001s15400.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.18e-48ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]