PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1420s0050.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 287aa    MW: 31468.7 Da    PI: 4.8394
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1420s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-1778128155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta+eAa a++ a+++++g
  SapurV1A.1420s0050.1.p  78 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYEAALAYDGAARAMYG 128
                             56*****999.**********8...2.35***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.32E-3078138No hitNo description
PfamPF008479.0E-1278128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2979137IPR001471AP2/ERF domain
SMARTSM003809.1E-3379142IPR001471AP2/ERF domain
PROSITE profilePS5103221.08779136IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2079137IPR016177DNA-binding domain
PRINTSPR003671.3E-98091IPR001471AP2/ERF domain
PRINTSPR003671.3E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTLIQGSND TSMSMDSTKK RKRAINKSVA MTLQKWKDYN ECLDAQGDGG SKPARKAPAK  60
GSKKGCMKGK GGPENSFCNY RGVRQRTWGK WVAEIREPNR GPRLWLGTFP TAYEAALAYD  120
GAARAMYGPF ARLNIPDAVN STSSSKDIFS VTPSYYSSAA SPADSVVTST HSEVCAYEDP  180
SQNVLSQAED WWTNISSQAE DWRTNISSQA EVCEQNVSSR HIEDCSRGVE KSSKLSEDEL  240
KTQSENPLLT SDWDNYSLDE IFSVEDLLGD IDYGMTGAEG YFSLGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1779141568ATERF1
3gcc_A5e-1779141568ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1420s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514540.0EF151454.1 Populus trichocarpa DRE-binding protein 2 (DREB2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461868.11e-166dehydration-responsive element-binding protein 2C
RefseqXP_024461869.11e-166dehydration-responsive element-binding protein 2C
TrEMBLB9HHV61e-165B9HHV6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07360.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-33DRE-binding protein 2A