PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1394s0060.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 466aa    MW: 50985.6 Da    PI: 7.8423
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1394s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.35.5e-38762342135
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 
                              g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ +i+el+ +                       
  SapurV1A.1394s0060.2.p  76 SGGKDRHSKVWTSQGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAQDSIDELPPLnhpfpdtpkqlsdekrtsdgteq 162
                             689*************************************************************88776666555554444333322 PP

                     TCP  66 ssssaseceaesssssasnsssg...............kaaksaakskksqksaasalnlak....esrakarararertrekmrik 133
                             +++sa                 +                + + +a+s+ s++s+ s l+la+      r kar+rarert+++  ++
  SapurV1A.1394s0060.2.p 163 GFDSA-----------------DvelndpnfnqnqnqhLSLSRSACSSTSETSKGSGLSLARsglrVNRVKARERARERTAKERENE 232
                             22222.................02222222222223334444444555555555555666654444778************999988 PP

                     TCP 134 nk 135
                             ++
  SapurV1A.1394s0060.2.p 233 TR 234
                             65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-4277230IPR005333Transcription factor, TCP
PROSITE profilePS5136931.99578136IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.64211229IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEAEEIQRQP CKFSRGGSGR SDSSRIAQNG CGDHQYPDEE EDGELKRSNP SSGGGAINRL  60
REWHHSSRII RVSRASGGKD RHSKVWTSQG LRDRRVRLSV TTAIQFYDLQ DRLGYDQPSK  120
AVEWLIKAAQ DSIDELPPLN HPFPDTPKQL SDEKRTSDGT EQGFDSADVE LNDPNFNQNQ  180
NQHLSLSRSA CSSTSETSKG SGLSLARSGL RVNRVKARER ARERTAKERE NETRNAHHHP  240
ISQNSTFTEL LTGGIGNVSN NNNSNSSSSN NNNNAASPSE ANLFQKAAAS RQWPLTPMDY  300
IGTGLLGPSS SRAAHHSSGF PGQIQLGNSI PQPMTMSVPP FNVSGENHQE QLQHFPFVSD  360
HLIPVAATTQ PVGDYNLNFT MSSSLAAGFN RGTLQSNSSS PSFFSHLQRF STSSPIDGST  420
TNVPFLLGAQ PQSMENHHHH QFPHGLQLCY GDGTRHSDQK GKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2483137155Putative transcription factor PCF6
5zkt_B1e-2483137155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1394s0060.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305700.20.0transcription factor TCP2
RefseqXP_024455006.10.0transcription factor TCP2
RefseqXP_024455007.10.0transcription factor TCP2
TrEMBLA0A3S9LXU20.0A0A3S9LXU2_POPTO; Transcription factor TCP2-like
STRINGPOPTR_0004s06440.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2