PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1279s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 546aa    MW: 59273.9 Da    PI: 8.3015
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1279s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.2e-15172231155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  SapurV1A.1279s0010.1.p 172 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 231
                             57*******************666664477446*************************98 PP

2AP247.15.8e-15274325155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.1279s0010.1.p 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 325
                             57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-12172231IPR001471AP2/ERF domain
CDDcd000182.13E-22172241No hitNo description
SuperFamilySSF541712.16E-17172241IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-16173241IPR001471AP2/ERF domain
SMARTSM003802.2E-29173245IPR001471AP2/ERF domain
PROSITE profilePS5103219.23173239IPR001471AP2/ERF domain
PRINTSPR003678.0E-6174185IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17274333IPR016177DNA-binding domain
PfamPF008477.2E-10274325IPR001471AP2/ERF domain
CDDcd000181.40E-24274333No hitNo description
Gene3DG3DSA:3.30.730.105.0E-18275333IPR001471AP2/ERF domain
PROSITE profilePS5103219.045275333IPR001471AP2/ERF domain
SMARTSM003802.0E-32275339IPR001471AP2/ERF domain
PRINTSPR003678.0E-6315335IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDSTSHQNWL GFSLSNRHHF NNNINIPSSS DSSHLSIFQA FNTAPTASAQ EVNAAAAAGR  60
ATDISLFTTS GPKLEDFLGS CTPTSPSQTP HQPLCGQFST ETPVTPTATT LSDSTSSEIY  120
DSELKTIAAS FLRGFASADN QKIDSNQKHQ QLLVQAEHAP KKTVETFGQR TSIYRGVTRH  180
RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTTTTNFPA  240
SNYEKEIEGM KHMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  300
LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMCRYDVK NIANSSLPIG GISGKSKNSS  360
ESASDSKSID ASRSDERDLS SASSVTFASQ PATSTLSFAI PIKQDPSDYW TNILGYQNTT  420
TAMNNARNSS SIVDPSALLQ SSTSGPAFQS PTGFSMDFNA NSSVNESNNS GLLLFNGGYT  480
QQQSGISTSS SGSNIPFATP IAFHSNGSSY EGNPGYSSWI AQSLHSFQSA KPNLSLYQTP  540
IFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1279s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453130.0EF145313.1 Populus trichocarpa clone WS01123_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381802.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-164AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLU5GBJ10.0U5GBJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s18330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-143AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]