PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1153s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 343aa    MW: 38139.5 Da    PI: 5.7683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1153s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.8e-20195245255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ kl+g
  SapurV1A.1153s0060.1.p 195 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTALEAARAYDRAAFKLRG 245
                             7********.**********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.9E-33194254IPR001471AP2/ERF domain
CDDcd000184.70E-32195253No hitNo description
PROSITE profilePS5103224.566195253IPR001471AP2/ERF domain
PfamPF008471.7E-14195245IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-23195254IPR016177DNA-binding domain
SMARTSM003802.1E-37195259IPR001471AP2/ERF domain
PRINTSPR003671.2E-10196207IPR001471AP2/ERF domain
PRINTSPR003671.2E-10219235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSTEVSSALE FIKNHLFGDL LSPLATSSSS SSVSFYQFST NTEISTNETT SCRSQTSTSA  60
SSTAFPGFFD SPDPSFFEFT SVFSPAQDNK TNIFEFEAKP EIIDLSTPKP LDSTSHLNIQ  120
PSSSTSSFEL VKPQIISQPS NNFFYEESRP GVQPTRKPSL KISLPGKKSE WIQFSNQDPQ  180
PLDDNSGVAV EAKRHYRGVR QRPWGKYAAE IRDPNRRGSR VWLGTFDTAL EAARAYDRAA  240
FKLRGSKAIL NFPLEAGKCD VRANEEGERK RLRECDAEEV EDVKRVMRVV KREEPERDVP  300
LTPSCWTAVW DHCGDSNGVF NVPPLSPLSP HPPLGFSQLM VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29194254161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1153s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2209740.0JX220974.1 Populus x canadensis cultivar Nanling895 ERF5-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368979.20.0ethylene-responsive transcription factor 6
SwissprotO803415e-67EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLJ7LJY70.0J7LJY7_POPCA; ERF5-2
STRINGPOPTR_0001s15400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-47ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]