PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1120s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 330aa    MW: 36491.7 Da    PI: 5.7862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1120s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016265287123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp+C+k+F +   L  H r+H
  SapurV1A.1120s0060.1.p 265 FECPYCSKVFGSGQALGGHKRSH 287
                             89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.2E-7328IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787431IPR007087Zinc finger, C2H2
SMARTSM003550.16426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.102.2E-4208276IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576673.81E-7222287No hitNo description
SMARTSM0035553222242IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058222252IPR007087Zinc finger, C2H2
PfamPF139120.013222242IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.284265287IPR007087Zinc finger, C2H2
SMARTSM003550.024265287IPR015880Zinc finger, C2H2-like
PfamPF139124.9E-13265288IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MERHKCKLCI RTFPNGRALG GHMKAHLAAT RQQLGGLDRT ESFSSSYSSS SGEEEVKEEQ  60
EIVKNREMAE EKSLAYGLRE NPKKSFRLAD PEFSFAADTA GSVVVQDRES ETESRNPTRR  120
RSKRIRFGDN QKQDFDANKA ADLKNPSWVE SSSPAEPEPV SSVSDTSPEE DVARCLMMLS  180
RDVWMRNIED DYEEQVGKDG EKSVEMLQEA EEIKVSKIRG KFRCEKCMKL FRSSKALSGH  240
KRICSLNATE VRKFAGSADA NDRIFECPYC SKVFGSGQAL GGHKRSHLIG SATSTSGVAE  300
ASAKLETSLI DLNLPAPVED DEFSVVSDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1120s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452722.10.0zinc finger protein ZAT9
TrEMBLA0A2I4KL000.0A0A2I4KL00_POPTR; C2H2 family protein
STRINGPOPTR_0001s15790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-44C2H2-like zinc finger protein