PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1120s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 271aa    MW: 29943.7 Da    PI: 4.6271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1120s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-182674355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a++ a+++++g
  SapurV1A.1120s0010.1.p 26 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDGAARSMRG 74
                            56******.**********965...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.6792582IPR001471AP2/ERF domain
CDDcd000186.04E-302581No hitNo description
SMARTSM003801.1E-332588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-292682IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-202683IPR016177DNA-binding domain
PRINTSPR003673.3E-82637IPR001471AP2/ERF domain
PfamPF008475.2E-112874IPR001471AP2/ERF domain
PRINTSPR003673.3E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNPSSSKSKR KQPQQAQQEP GTGLRFLGVR RRPWGRYAAE IRDPSTKERH WLGTFDTAEE  60
AALAYDGAAR SMRGPRARTN FVYSDMPAGS SVTSIISPED QQFLQQQQQL QQNSDHDDSL  120
SSLFFNARPP THDLQPDSTP IFNQDFSSQC HLRDGCSSMI SDGDFWCCSS TRTYNQQLQH  180
VNDSNVLPDH EFPSDLSLDS GLADSSSSRL MGFEDLTAMA TGFDSVGGSG GSSFWFDSGE  240
YVHSPLFSRM PPVSDMVPDG FDLSSSAYFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-182381362ATERF1
3gcc_A2e-182381362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1120s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385541.11e-150ethylene-responsive transcription factor LEP
TrEMBLA0A3N7G2C01e-149A0A3N7G2C0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s07540.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-34ERF family protein