PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1115s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 378aa    MW: 41595.1 Da    PI: 4.5412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1115s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18116165255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  SapurV1A.1115s0040.1.p 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 165
                             69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.236116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-32116175IPR001471AP2/ERF domain
SMARTSM003801.1E-36116179IPR001471AP2/ERF domain
CDDcd000183.01E-33116174No hitNo description
SuperFamilySSF541712.81E-22116175IPR016177DNA-binding domain
PRINTSPR003671.1E-11117128IPR001471AP2/ERF domain
PfamPF008471.8E-11117165IPR001471AP2/ERF domain
PRINTSPR003671.1E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MCGGAIISNL IPPTTTARSS RRFTEGFEWL DTKKPFNNKK CSKPVVINLD DDFEADFQEF  60
KDESDVDESY DVFVDVKPFA FSATASGPAK KRSAAVKSAE ISGQAEKSAK RKRKNQYRGI  120
RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDVEA RRIRGKKAKV NFPDEAPLAS  180
SKQSIKENSR KSLPKTDSSR TFSYSSNPEL DCNNMGLVEE KPLVNQFGSI YSFPASGDSG  240
MKTLAESDST PMCFNSDQGS NSVDCDLEWG EQTPMTPESL TVLAATSEAD ESLLANPEEL  300
KSYSGNAVPA EEKSGKSLSE ELLAFDDQLK YLQMPDLEGS SWEASLDNFL NGETTQDGTN  360
AMDLWSFDDF PSMVGGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-211151811380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1115s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369093.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLB9N7H50.0B9N7H5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s16400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.37e-69related to AP2 12