PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1092s0100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 197aa    MW: 22426.1 Da    PI: 4.4434
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1092s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.71.5e-29111291128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGf F+Ptdeel+ ++L++k++  ++   ++i++++iy  +Pw+L+ k+  +e++wy+Fs+          +n+at++g+Wk + 
  SapurV1A.1092s0100.1.p  11 LPPGFIFSPTDEELILHFLHRKASLLPCYP-DIIPDLGIYPQDPWQLEGKALWSENQWYYFSQVMM-------ENQATENGFWKPSD 89 
                             79*************************888.89**************977777899******9866.......5779********** PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +++++s+ +g++vg kk Lv+  g++    +t+W+m+ey+l
  SapurV1A.1092s0100.1.p  90 IEEPIFSTsTGKKVGSKKHLVYCIGTEDA--ETNWMMQEYHL 129
                             ******9878999**********988877..9********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-397157IPR003441NAC domain
PROSITE profilePS5100537.25911158IPR003441NAC domain
PfamPF023659.1E-2012129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGDHGCSGNN LPPGFIFSPT DEELILHFLH RKASLLPCYP DIIPDLGIYP QDPWQLEGKA  60
LWSENQWYYF SQVMMENQAT ENGFWKPSDI EEPIFSTSTG KKVGSKKHLV YCIGTEDAET  120
NWMMQEYHLC SSKSSGTSYK RKQKIDCNKW ILCRVYQREG SCPTSLNHGD DDGTELSCLD  180
EMFLSMDDLD DISFPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-281016216169NO APICAL MERISTEM PROTEIN
1ut4_B1e-281016216169NO APICAL MERISTEM PROTEIN
1ut7_A1e-281016216169NO APICAL MERISTEM PROTEIN
1ut7_B1e-281016216169NO APICAL MERISTEM PROTEIN
4dul_A1e-281016216169NAC domain-containing protein 19
4dul_B1e-281016216169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1092s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2861654e-81GU286165.1 Populus balsamifera isolate LOV02 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861674e-81GU286167.1 Populus balsamifera isolate FBK13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861694e-81GU286169.1 Populus balsamifera isolate GAL12 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861714e-81GU286171.1 Populus balsamifera isolate INU03 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861734e-81GU286173.1 Populus balsamifera isolate RNA13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861754e-81GU286175.1 Populus balsamifera isolate STO11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861774e-81GU286177.1 Populus balsamifera isolate WHR03 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307034.31e-113NAC domain-containing protein 104
RefseqXP_011031172.11e-113PREDICTED: NAC domain-containing protein 18-like
SwissprotQ8GWK63e-63NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2K2ACF61e-112A0A2K2ACF6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06510.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-58xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]