PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1065s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 234aa    MW: 25915.9 Da    PI: 4.8393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1065s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-17108158255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp+      r++lg+f++  +Aaka++ a+ k++g
  SapurV1A.1065s0040.1.p 108 HYRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTFDSDIDAAKAYDCAAFKMRG 158
                             7********.**********8542..4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-31107167IPR001471AP2/ERF domain
CDDcd000181.17E-28108166No hitNo description
SMARTSM003803.6E-35108172IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-22108167IPR016177DNA-binding domain
PfamPF008476.0E-13108158IPR001471AP2/ERF domain
PROSITE profilePS5103224.131108166IPR001471AP2/ERF domain
PRINTSPR003674.6E-13109120IPR001471AP2/ERF domain
PRINTSPR003674.6E-13148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MATPEESSTL ELIRQHLLGD FTSTDEFINS LESSVASIYI KLENSLSGSE SNSPISDQSY  60
CTQETCRFEI KSENIDLTPP EPMFSDSSNQ SPPPELVKMA DKDETTRHYR GVRRRPWGKF  120
AAEIRDPTRK GSRVWLGTFD SDIDAAKAYD CAAFKMRGRK AILNFPLEAG LSSPPPATGR  180
KKRRVKREEV LPESVDASPE NWNAGWSGGE AEGVSDEEQL SPLSRKPVLL TCQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27107167161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179186RKKRRVKR
2180185KKRRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1065s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299407.21e-138ethylene-responsive transcription factor ERF106
TrEMBLB9GK331e-136B9GK33_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11800.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.13e-42ERF family protein