PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1043s0120.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 359aa    MW: 40179.5 Da    PI: 5.0356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1043s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-20131180255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+W+AeIrdp +   r r +lg+++taeeAa+ +++a+ kl+g
  SapurV1A.1043s0120.1.p 131 KFRGVRQRP-WGKWAAEIRDPAK---RVRLWLGTYDTAEEAARVYDNAAIKLRG 180
                             89*******.**********843...6*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-30130187IPR001471AP2/ERF domain
PROSITE profilePS5103224.118131188IPR001471AP2/ERF domain
PfamPF008473.6E-13131180IPR001471AP2/ERF domain
CDDcd000181.63E-34131187No hitNo description
SuperFamilySSF541711.05E-21131187IPR016177DNA-binding domain
SMARTSM003802.0E-39131194IPR001471AP2/ERF domain
PRINTSPR003671.9E-10132143IPR001471AP2/ERF domain
PRINTSPR003671.9E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MIHQSILCPI KYTEHKKVTK KFTKQPVKPK KVHSDDRCRS PEPSNPPPRL VRVTVTDRDA  60
TDSSSDEEGE LFGRQRVKRY VNEINIQPAA FCKETNVNAA TIAKNRKRSG GDIPQKPAKK  120
FTTQSTNNGR KFRGVRQRPW GKWAAEIRDP AKRVRLWLGT YDTAEEAARV YDNAAIKLRG  180
PDALTNFITP PSREEDQEEK SSAEEESEEK KPEINVDTVS GSGYESADES HSLSSPKSVL  240
TFRLPSAESH KPPGQPSQEA KMAEPKHEEN QEAFGESNLC DYLPLDSTFL DQFFSFGTAG  300
PTLLDSQSIP TTATTSIFQE SIMCDQDFGD TFLEPLQDLT SLSSFFEDDD DCFDFLNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20129187362ATERF1
3gcc_A1e-20129187362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1043s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001929.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
RefseqXP_011016600.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2K1Y8600.0A0A2K1Y860_POPTR; Uncharacterized protein
STRINGPOPTR_0012s01260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-63cytokinin response factor 4