PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1017s0070.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 361aa    MW: 40403.7 Da    PI: 4.9503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1017s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20129178255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+W+AeIrdp     r +r +lg+++taeeAa+ +++a+ kl+g
  SapurV1A.1017s0070.1.p 129 KFRGVRQRP-WGKWAAEIRDPA----RrQRLWLGTYDTAEEAARVYDNAAIKLRG 178
                             89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-30128186IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-22129186IPR016177DNA-binding domain
SMARTSM003801.1E-39129192IPR001471AP2/ERF domain
PfamPF008471.4E-13129178IPR001471AP2/ERF domain
PROSITE profilePS5103224.381129186IPR001471AP2/ERF domain
CDDcd000188.44E-34129185No hitNo description
PRINTSPR003672.1E-10130141IPR001471AP2/ERF domain
PRINTSPR003672.1E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMDQSILCPI KYTEHKKVTK KFTKPPLKPK KLASDDRCRL PEPSNPQPRL VRVTVTDHDA  60
TDSSSDEEGL LFGRQRVKRY VNEINIQASC KETNAIAPAV ASNRKRSVGD IPQRPAKKVA  120
TQSTNNGRKF RGVRQRPWGK WAAEIRDPAR RQRLWLGTYD TAEEAARVYD NAAIKLRGPD  180
ALTNFTTPPS REEEQEQEKS TAEEPEGAEE KKPESNVTVS GSGYESADES HSLSSPKSVL  240
TFRLPSAESH KPPVHPFQEA KMEPRFQDNQ EAFGESNSTD YLPLDAPFLD DFFNFETSGP  300
TLFDDQATAT TSVFEERFVS NQDLGDIFLD PLQDFSSLSS ACLDDDDFFH FLNSEPLAAL  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19127185362ATERF1
3gcc_A1e-19127185362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1017s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1968130.0AC196813.1 Populus trichocarpa clone Pop1-114I2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007936.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2K1XGV70.0A0A2K1XGV7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-65cytokinin response factor 4