PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1000s0130.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 312aa    MW: 33744.1 Da    PI: 10.0643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1000s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19155204356
                     AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++ a+++l+g+
  SapurV1A.1000s0130.1.p 155 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRGA 204
                             9*******.**********32....25**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.682154211IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-21154211IPR016177DNA-binding domain
SMARTSM003805.4E-31154217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-29154211IPR001471AP2/ERF domain
PfamPF008471.6E-13155203IPR001471AP2/ERF domain
PRINTSPR003671.3E-10155166IPR001471AP2/ERF domain
CDDcd000182.05E-32155212No hitNo description
PRINTSPR003671.3E-10177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTCYTLNTYQ QNPAMNHQKL LPVPFFPQPE TFQMFRLLTE NSTFCGSFVE PQISFSSPFT  60
FNHYNPTSCS PVSPDIPAAV SLSDGFKKSP ETPLVLDGIG AVVGQQVLFG KNDTKNSEVS  120
KLSSISQRTG SKTSKQESGA MRNSVSDGVS TQKAYRGVRK RPWGRWSAEI RDRIGRCRHW  180
LGTFDTAEEA ARAYDSAARR LRGAKARTNF EIPPVLPTIS PSSSPPSSCS GSISNNNAEP  240
RKRTKVCNHS SKMIGRKCAV VTSVAHLFSN FEGKGTSSGG NVELELKLGM GSDGYQGGNK  300
IAASAPPYMV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17153212161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1000s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323768.31e-173ethylene-responsive transcription factor ERF084
TrEMBLA0A2K1X3K41e-172A0A2K1X3K4_POPTR; Uncharacterized protein
STRINGPOPTR_0017s08090.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-25ERF family protein