PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0901s0090.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 352aa    MW: 38925.7 Da    PI: 9.8742
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0901s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.19.6e-3248146289
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssas 83 
                              g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++  ++      ++ss++ +s
  SapurV1A.0901s0090.1.p  48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGIFSlnrqaMPGSSHEVGS 134
                             689*************************************************************77776444221121111111111 PP

                     TCP  84 nsssg......k 89 
                             ++ss+      +
  SapurV1A.0901s0090.1.p 135 SQSSKevlkmsN 146
                             111112222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.46950108IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-2950169IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MIPSSKQVGS PAKKEENSND SKISKASSSS GTWLRLKDPR IVRVSRAFGG KDRHSKVCTI  60
RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPIPPGIFSL  120
NRQAMPGSSH EVGSSQSSKE VLKMSNSINW EDTSGFTRPG FWNADAILRA KSKEVAIDPV  180
NEKENWKKRD EEDKQDGNIE GNSAQVLSGG FFQRASHSSL PKTPSFPLSH MGNHGFAAQT  240
GDIHNLNVLP FSSALSLSSG SQILVCPPVT TQSYFPSHAT TSMEIDPRQI NHFQWLTPST  300
QNHLPNSLTP SPYPINQSMR PYSQYFSVTP RVLHSHNSES PPDKDPLFPF K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1755109155Putative transcription factor PCF6
5zkt_B1e-1755109155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0901s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305384.10.0transcription factor TCP13 isoform X1
RefseqXP_024449006.10.0transcription factor TCP13 isoform X1
RefseqXP_024454630.10.0transcription factor TCP13 isoform X1
RefseqXP_024454631.10.0transcription factor TCP13 isoform X1
TrEMBLB9H0G50.0B9H0G5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.18e-39plastid transcription factor 1